The colour of your eyes is caused by pigment molecules in the iris, the ring that surrounds the black pupil in the centre.
While eye colour is actually more complicated than the this, dark eyes (such as brown or black) is dominant (E) and light eyes (such as blue or grey) is recessive (e).
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A father and a mother both have brown eyes. Their two sons have blue eyes and their two daughters have brown eyes. One daughter carries the gene for blue eyes, the other doesn't.